Seminar series: David Angeler, Swedish University of Agricultural Sciences

FoodWeb

Part of our series of posts by final-year undergraduate students for their Research Comprehension module. Students write blogs inspired by guest lecturers in our Evolutionary Biology and Ecology seminar series in the School of Natural Sciences.

This week, views from Somantha Killion-Connolly and Joe Bliss on David Angeler’s seminar, Ecological complexity: a torture or nurture for management and conservation?

Panarchy – Sense or nonsense?

Scientists have been told for many years now to lift their heads from their microscopes, look up and take in the bigger picture. Well the picture has gotten even bigger and more complex according to the hypothesis of panarchy (Gunderson & Holling, 2002). In a recent seminar by Dr. David Angeler of the Swedish University of Agricultural Sciences, Dr. Angeler attempted to communicate this approach as the way forward in ecosystem management. If you were to do a search of the internet for the definition of panarchy, don’t expect a nice simple concise definition, as this controversial approach takes a bit of explanation. Ecologists have been providing evidence for decades showing that ecological systems are far more complex than imagined. Panarchy attempts to provide a conceptual framework for characterising the interactions between ecological and human systems in order to manage them in a sustainable manner.

Panarchy seeks to find common ground between economic, social and ecological theories. This seems like a big ask and paradoxically the way it seeks to achieve this is, using Dr. Angeler’s analogy, to break up the big picture into smaller pieces to make a jigsaw puzzle. Where the hypothesis begins to make a lot of sense is that is requires you to take not only a top –down, as was traditionally used, but a bottom up approach also. Ecologists have traditionally investigated ecological communities and how they have changed spatially and temporally. Dr. Angeler proposes to instead look the big ecological picture in terms of scales. We should not only be looking at how organisms at different scales are affected by biotic and abiotic variables in time and space, but also the interactions between scales. Therefore, according to panarchy, ecological systems consist of scale specific structures and processes that change and interact as you advance through the scales. The further spatial dimensions are increased, the slower the processes are in the environment and vice versa.

Where the theory begins to get more complicated is when you need to view an ecosystem and its constituents as undergoing a continuous cycle of change, with four defined stages. The stages are referred to as the exploitation stage (rapid expansion in an open niche), conservation stage (accumulation of energy and a period of stability where the carrying capacity is reached), the release stage (period of rapid decline due to changes in pressures) and the re-organisation stage (period of natural selection from the pressures of the release stage).

Dr. Angeler in his research on the invertebrates in freshwater lakes of Sweden (Angeler et al., 2013) has shown how the theory is empirically testable using multivariate time series modelling. This method is based on a redundancy analysis and adapts a spatial method to time series analysis. Using this long term data set collected by his University, Angeler’s aim was to track changes in the species community and gain an understanding into what are the vulnerabilities of these vertebrate communities to changes in their environment.  The practical goal of this work is to prevent a system from reaching its tipping point. The results of this study suggested that studying processes that happen on a temporal scale which are un-related to general environmental changes has strong management and conservational potential. Personally, I think the main concepts of panarchy do make sense but its application and the analysis required is far from simple and it really is a difficult idea to communicate.

Author: Somantha Killion-Connolly

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Multivariate Time Series Modelling Explained
I think the language of science often hinders the communication of ideas and restricts them to a narrow audience of specialists. I attended a talk given David G. Angeler presenting his research on Ecological Complexity using Multivariate Time Series Modelling and the Panarchy concept to study the condition of a number of Swedish lakes. I found it difficult to even understand what the research was about so, I have been inspired to write this blog and explain part of this complex topic, in simple language which I hope will be graspable for a wider scientific audience.

Let us start be first breaking down the term “multivariate time series modelling” and studying its parts.  Multivariate means more than two variable quantities. In this context of studying ecological complexity, these variable quantities include the number of organisms of a particular species or species group as well as abiotic factors such as mineral concentrations and water temperature. Time series modelling involves plotting data at uniformly spaced time intervals.  So multivariate time series modelling is plotting multiple variables against time.

The benefit of plotting multiple variables such as multiple abiotic factors and a species population’s numbers on a specific time scale is that it allows you to find correlations between factors. For example, if we take the population numbers of a plankton species which were sampled once a month in a lake we can plot the population number over a year and see how the population fluctuates. Our plankton may show fluctuations up and down over the year. To investigate whether any of the abiotic factors influenced the fluctuations in our plankton numbers we can plot how the abiotic factors fluctuated over the same time span and see if any of them correlate with the fluctuations of the plankton. If any of the abiotic factors fluctuate with the same rhythm as the population then we might suspect this in an important factor influencing the population. However this doesn’t rule out the possibility that the abiotic factor itself varies with the population number but is not the cause of the fluctuation, correlation does not prove causation, but this can then be investigated by experimentation.

Another important benefit of using multivariate time series modelling, which Angeler used when studying the ecology of his lake, is that it allows us to see correlation at different time scales. For example plankton may fluctuate up and down in a regular pattern in response to annual variation in day length. But on a longer time scale, say over 20 years, there may be a trend of increasing population numbers due to a large scale effect such as climate change.

Looking at ecological variation using multivariate time series modelling allows us to assess how organisms are responding to different conditions on small and large time scales. Angeler hopes to use these data to assess the health of ecosystems and to understand how they will be able to handle changing conditions such a global warming. He suggests that management may be able to aid ecosystems facing this large scale change by affecting them in ways which act on smaller scales.

Author: Joe Bliss

Image Source: Wikicommons

Join us!

Uncle_Sam_(pointing_finger)It’s that time of year again at EcoEvo@TCD where we start looking for people to apply for Irish Research Council fellowships to come and join us as postdocs or PhD students. These awards are open to anyone, regardless of nationality. Details can be found here(PhD funding) and here (postdoc funding).

But why would you want to join us? I can talk (type?) at length about this but maybe the best people to ask are the students  and postdocs we already have working here. So here are their comments instead!

Thomas Guillerme @TGuillerme

Supervisor: Natalie Cooper (Zoology)

As a French student, starting a PhD in this department was made really easy by the people working here. Not only the academic work and projects are really exciting, but also the social part of the department makes work really easy going and fun.

Deirdre McClean @deirdremclean1

Supervisor: Ian Donohue (Zoology)

I can’t recommend the zoology department enough as a place to do a PhD! This is largely due to the great diversity of projects going on and the close relationships between staff and students. Collaboration is greatly encouraged and there is so much opportunity for this through NERD club, tea breaks and pub trips!  We have a really nice mix of empirical and theoretical projects meaning that we get really different and interesting perspectives on our work, which I think has been great in my development as a scientist.  Being in a small department has a lot of advantages and it means I always find so much support from my supervisor, other PhD students and other staff. Because of the friendly atmosphere and the variety of research groups and backgrounds, lunchtimes, tea breaks and pub visits provide great opportunities for getting input on your work, coming up with new ideas and having debates! There is also a lot of opportunity for teaching, outreach and collaborating with other groups/departments. The campus here is beautiful and right in the centre of town so it’s a really nice place to work and socialize too!

Shane Mc Guinness @S_Mc_G

Supervisor: Anna Davies (Geography)

Without the support, funding and independence provided by IRC funding, my amibitions to study endangered species conservation and human development in Africa would not have been realised. In addition, the increasing integration of the School of Natural Sciences makes this a truly interdisciplinary environment to work in.

Karen Loxton @LoxtonKaren

Supervisor: Celia Holland (Zoology)

From fantastic supervisors to technicians who seem able to solve any problem, the Zoology Dept. has been an amazing place to study for a PhD. Staff are generous with their time and expertise and the seminars and EcoEvo group are a great way to keep up to date with research outside your own. The diversity of projects within the department ensures that pub conversations are always an opportunity to learn something new and interesting.

Kevin Healy @healyke

Supervisor: Andrew Jackson (Zoology)

So far I have really enjoyed doing my PhD in the Zoology department, mostly this is due to the fact that we get the opportunity to work on loads of cool collaboration projects (right now I’m working on a T.rex paper due to a bet in the pub on who could have a dinosaur paper first) but also because there is a very relaxed social vibe to the department as well. I think my development as a scientist over the last two years is also really down to the amount of support from not just my supervisor but all the other members of staff, whether its from our NERD club meetings, going to conferences or just a lively debate at lunch. It also helps that the department is right in the middle of Dublin so there’s plenty of pubs to continue work after 5!

Sive Finlay @SiveFinlay

Supervisor: Natalie Cooper (Zoology)

The Zoology Department is a lovely home for a PhD student. There is a very relaxed, friendly atmosphere with plenty of opportunities to mix with and learn from staff, postdocs and fellow students. We’re a relatively small department but that is definitely to our advantage because you get to know people from diverse research backgrounds and you’re not lost in the anonymity of being yet another student in a large research lab. In the past few years there’s been increased collaboration and integration across the School of Natural Sciences through our NERD club meetings, postdoc talks, weekly seminars from invited speakers and via the EcoEvo blog, all of which are great for getting out of the bubble of being stuck in your own project. There are also plenty of opportunities to get involved in teaching, collaborative projects, fun outreach events and of course a healthy amount of socialising… What’s more, Trinity is a great university with a beautiful campus in the centre of the city – not a bad place to work!

Seán Kelly @seankelly999

Supervisors: Nicola Marples and Dave Kelly (Zoology)

The Zoology Department and the School of Natural Sciences are full of friendly and welcoming students and staff from a great variety of backgrounds. I never fail to find support or advice on my PhD project when it’s needed, whether from my supervisors, other staff or students. The diversity of expertise within the department is a real asset; one that is readily available to you. Integration within and between the various departments is ever increasing and collaboration is greatly encouraged. Lunchtime conversations often turn into lively debates and sometimes lead to new collaborative projects. There’s ample opportunity for teaching experience, group learning and social outreach, as well as socialising, of course.

Sarah Hearne @SarahVHearne

Supervisor: Ian Donohue (Zoology)

I was nervous moving to a new university to study a new field of biology, but I shouldn’t have been. The department is incredibly friendly and welcoming and there is a great spirit of collaboration. This isn’t a place to hide away for three years, it’s a place where discussions are had or ideas spawned over a pint in the pub or during a lunch break. People share their successes and commiserate over failures. Some great science is done as well!

Adam Kane @P1zPalu

Supervisor: Andrew Jackson (Zoology)

The Zoology department has a great group of scientists who are interested in each other’s research which makes for excellent collaborative opportunities. The best advertisement I can give for it is that I don’t dread getting out of bed on a Monday morning.

Katherine Webster

Supervisor: Ian Donohue (Zoology)

Being part of the dynamic and interactive EcoEvo group in the School of Natural Sciences has greatly enhanced my experience at Trinity as a postdoc. From the students to faculty, you gain valuable feedback into your own research while learning about new ideas that expand your own perspectives. Being in Dublin and walking the hallowed grounds of Trinity College certainly adds to the experience!

If you’re interested and have a member of staff with appropriate research interests in mind, please get in touch! Contacts and research profiles of staff can be found here. Note that, unfortunately, the application success rate is fairly low and the applications themselves take a bit of effort to fill in for both the applicant and the academic who supports the application. Because of this we won’t be able to support every person that contacts us. But we promise to be realistic about your chances of getting funding. This is judged on your CV, the project, and the fit of the project to the chosen supervisor. The call opens in November and the deadline is January.

Author: Natalie Cooper, ncooper[at]tcd.ie, @nhcooper123

Image: Wikimedia commons

Blog-tastic!

Seminar

Andrew Jackson and I started a new module this year called “Research Comprehension”. The aim of the module is simple: to help students to develop the ability to understand and interpret research from a broad range of scientific areas, and then to develop opinions about this research and how it fits into the “big picture”. In our opinion, this is perhaps the most important thing an undergraduate can get out of their degree, because no matter what you do when you graduate, in most jobs you will be expected to read, understand and interpret data. Often this will be in a subject you are unfamiliar with, or use unfamiliar methods or study organisms. So being able to understand this information is key!

The module revolves around the Evolutionary Biology and Ecology seminar series in the School of Natural Sciences, so the topics are broad and cover whole organism biology, molecular biology, genetics, plants, and animals etc. Students attend the seminar on a Friday and read some papers sent on by the speaker. There is then a tutorial on a Monday with a member of staff who has interests in the area of the seminar. This gives everyone a chance to clear up any confusion and to discuss what they liked (and disliked) about the seminar. The continuous assessment for the module is in the form of the blog posts we will post here. Thus the module also aims to improve the students’ abilities to communicate all kinds of scientific research to a general audience, a skill that is currently in great demand.

From next Wednesday onwards we will select a few blog posts to put onto EcoEvo@TCD. These may not necessarily be the posts that get the best grades, but they’ve been chosen to reflect the diversity of angles the students have taken to communicate the parts of the seminar they found most interested. Overall we’ve been extremely impressed with the quality of their blog posts, so we hope you enjoy reading them!

Author: Natalie Cooper, ncooper[at]tcd.ie, @nhcooper123

Image Source: Jorge Cham, www.phdcomics.com

Trophy Hunters

Antler collection at Harvard's Museum of Comparative Zoology
Antler collection at Harvard’s Museum of Comparative Zoology

It may be an inconvenient truth in these conservation-focused times but we owe a debt of gratitude to the trophy hunters; the army officers and colonial-types who killed animals for sport and prestige. Without their considerable efforts, the vaults of natural history museums would be devoid of the skeletons and skins which form the bases of both exhibitions and many PhD and MSc. theses. Of course, were it not for the over-zealous efforts of hunters perhaps many charismatic animal species wouldn’t be so endangered now but let’s focus on the positives here…

Naturally, if you’re a hunter looking for a prize, bigger is usually better. It’s far more impressive to have a stag or bear’s head mounted on your wall than a hedgehog or shrew – although I would like to hear the embellished stories which might arise from tales of killing your first hedgehog! Similarly, if you are a taxidermist or museum collections manager in many ways it is easier to prepare and preserve large rather than small mammal specimens.

These collection trends are all well and good if you’re interested in the charismatic species. I, however, am studying the little shrewy-type things; hedgehogs, moles, shrews, golden moles and tenrecs – fascinating species but not prized possessions for your trophy case. Even in some of the world’s largest natural history museums it’s difficult to find intact skulls and skeletons of some of these creatures. Combined with the inherent delicate nature of these animals (some tenrecs’ limbs are tiny!) compiling a complete morphometric data set of the groups remains challenging.

Tenrec limbs with a pen for scale; teeny tiny tenrecs!
Tenrec limbs with a pen for scale; teeny tiny tenrecs!

For the museum collections of these little critters that do exist; I am eternally grateful to the progenitors of carefully handwritten labels accompanying the skulls and skeletons on which my PhD research depends. Adventurers such as Major Forsyth, G.K., Creighton, and C.J., Raxworthy who donated specimens from their tropical voyages deserve special thanks in any research which arises from their collective efforts. However, I am also grateful to the back-yard naturalists, the people who collected and preserved the seemingly ordinary, every-day species of common shrews and hedgehogs which are no less important to ecological and evolutionary research than their exotic counterparts. I benefitted greatly from their collective efforts during my recent trip to Chicago’s Field Museum.

Whether naturalists or trophy hunters, the individuals immortalised by museum specimen labels couldn’t possibly have envisaged all of the diverse future research which would be based on their prized collections. It’s an important reminder that, despite the inherent appeal of flagship species, the lesser-spotted or common-something-or-others are just as deserving of our attention and study. Even if you don’t have the equipment or inclination to start posting skeletal remains of common species to your local natural history museum, there are still plenty of ways of contributing to the study of “ordinary” wildlife. Don’t be dazzled by the allure of large-animal trophy hunting and remember that, when it comes to understanding the natural world, bigger is not always better.

Author:

Sive Finlay: sfinlay[at]tcd.ie

@SiveFinlay

Photo Credits

Sive Finlay

Big is better!

INTECOLlogo

Reflections on geeking it up at Intecol 2013 by Jane Stout

Having not been to a 2000+ delegate, multi-session, international conference for several years, I was a bit nervous in the run up to INTECOL2013 “Into the next 100 years: advancing ecology and making it count” – would it be possible to see all the talks, read all the posters and meet all the people I planned to? (Answer: no). Would I remember everyone and would anyone remember me from past meetings? (Answer: some yes, some no – thank goodness for name tags). Could I follow in the footsteps of Katie Taylor, the last girl from Bray to take the stage at the London ExCeL Arena, and take the Olympic gold? (Answer: no; note to self: must try harder). But I needn’t have worried – INTECOL 2013 was excellent: it was well organised, the quality of the science was top-notch, the sun shone, and the whole thing was very inspiring and humbling. Continue reading “Big is better!”

The ‘Natural’ World

What images come to mind when you think of a field ecologist? Do you see what I see? I see someone, probably in khaki shorts and a broad-brimmed hat,  walking through thick rainforest, listening to the calls of birds, waving off insects determined to find a patch of skin to bite, and smelling the exotic aromas of plants and animals living, dying and decaying.

You may well be thinking that this is an idealised image of a field ecologist and while it may have been true 50 years ago, it’s harder to imagine now. After all, every day we hear about habitat destruction and how mankind is damaging the natural environment. But I’d like to propose that even 50 years, or 100 years, or even 1000 years ago mankind was having an impact on the environment and this idea of the ‘natural’ world really needs rethinking.

Take, as an Irish example, the Burren. I visited this area for the first time a few weeks ago and was stunned by the rugged beauty of the place. It was sparsely populated, only a few sheep and cows (and the occasional donkey) provided evidence of any human presence in places; how much more ‘natural’ could one get? Plenty more, it turns out, as the entire landscape is the result of human impacts.

The entire area is littered with signs of prehistoric people, the most striking of which was the 5,000 year old Poulnabrone portal tomb. This tomb dominates a limestone pavement with a view that stretches for miles across to the sea. Yet reading the information boards it quickly became apparent that this was not the landscape in which the tomb was constructed. At that time the area was heavily forested with small clearings made by people to farm and build their homes. The tomb would most probably have been largely hidden from all but those who knew its location. Yet over the next few thousand years people cut down more and more trees to make use of the timber and to clear the way for more farmland. However, the trees were the only thing holding the thin soil in place and with the loss of the trees, the soil soon followed, until all that was left were patches of vegetation and entire hillsides of exposed limestone bedrock. That stunning ‘natural’ landscape is the result of ancient habitat destruction!

Poulnabrone tomb. Image by Sarah Hearne
Poulnabrone tomb. Image by Sarah Hearne

 

A similar story can be told across much of the world. New Zealand, adopted home of the hobbits, with its fields and rolling hills, was once almost entirely forest. Yet when the Maori reached the islands around a thousand years ago they proceeded to reduce the forest cover by almost half, and the European settlers reduced it by half again. In addition, the loss of so many endemic species also led to changes in the structure of the remaining forests, though precisely how is still being debated.

Ewers et al. (2006)

 

It’s the same the word over. Take, as a final example, Australia. The sixth largest country, the world’s largest island, yet it has only 0.33% of the world’s population. Surely humans can’t have had much of an impact there? Well, yes they can, particularly if you think that they are at least partly responsible for the loss of the megafauna. For more details on that I highly recommend Tim Flannery’s 1994 book ‘The Future Eaters’, with the teaser that I never knew that dung was so important to a properly functioning ecosystem! But even ignoring that, Aborigines had a long and close association with the land, heavily modifying environments through activities including the use of controlled burning.

I could go on (and on, and on) for every habitat on almost every continent, but it would get rather monotonous. My point is that when we look at the ‘natural’ word we rarely see something that’s never been touched by man however far into the ‘wilds’ we go. The ‘natural’ world has been modified, sometimes subtly, sometimes dramatically, for thousands of years as countless generations have struggled to survive and prosper.  Ecology, however much we like to think otherwise, always involves a human component. Sometimes the humans who made the impacts have long gone and the landscapes have become so normal and ‘natural’ its hard to think there was a time they were ever different. But if we are to understand the world we need to understand the historic impacts we have had, not just on climate, not just in towns and cities, but also on the ‘natural’ world.

Author

Sarah Hearne: hearnes[at]tcd.ie

@SarahVHearne

Image sources

Sarah Hearne

Ewers et al. (2006) Biological Conservation 113:312-325

 

The world dyed by algae

Photograph by Brian Skerry, National Geographic
Seamount, Cortes Bank

The term “algae” does not refer to a single taxonomic group but instead comprises a diverse array of species, from prokaryotic cyanobacteria to many types of unicellular and multicellular eukaryotes. It’s well known that algae make great contributions to sustaining the diversity and productivity of our natural world. It has been estimated that the number of algae species could range from 30,000 to more than 1 million. So it’s not surprising to find that algae, so high in diversity and abundance, have significantly altered the appearance of our planet.

Just as plants add colour to our terrestrial world, algae are responsible for the diverse colours of many aquatic systems. Without the existence of macroalgae, most marine zones would be barren places and we would miss the beauty of park-like intertidal zones and magnificent marine forests comprised of gigantic algae such as the Giant kelp (Macrocystis pyrifera). In the shallow zone of rivers and lakes, attached filamentous macroalgae can flourish when the pressure of competition from aquatic plants is low, making the river and lake much greener than it would be otherwise. Microalgae also play their own role in dyeing the environment. In marine areas with high concentrations of phytoplankton, the existence of large amounts of chlorophyll absorbs the red and blue portions of the light spectrum and reflects green light. Therefore, sea water in these regions is not blue but appears as different shades; from blue-green to green. Attached microalgae, such as some benthic diatom species, can easily occupy diverse substrates, such as stones and aquatic plants, and decorate that substrate with their own colour. Despite their tiny volumes, only several μm in length or diameter, the adherent strength of these algae is quite strong and it is not easy to remove them from the substrate (as I found out when helping Lindsay with her field experiments!).

Some people might say they prefer multicoloured coral reefs to algae. However, even the beautiful colours of coral reefs depend on Symbiodinium, one group of dinoflagellate algae which live in a symbiotic relationship with coral polyps. However, this relationship is not absolutely stable and severe environmental stress can sometimes weaken the symbiotic bond. Increased sea water temperatures and ocean acidification can cause coral polyps to expel their algae. As a consequence, the corals lose both their color and any phototrophic capabilities and eventually become boringly white; a process termed coral bleaching.

Bleached coral reef
Bleached coral reef
Healthy coral
Healthy coral

Algae are also responsible for the beautiful colours of some sea slug species. In contrast to the harmonious symbioses between algae and corals, some sea slugs directly consume algae and use the algae’s pigment to produce remarkable body colors which can either be apatetic or aposematic in their functions.

Sometimes, however, algal colouration is not always welcome. Blooms of intensively growing algae can produce very ugly and unpleasant colours. Cyanobacterial blooms are one of the most common environmental problems in freshwater systems including eutrophic lakes, reservoirs and the backwater zone of rivers. During bloom periods, lake surfaces can be partly or fully occupied by cyanobacterial cells, creating an unappealing dark blue-green colour.

A cyanobacterial bloom in Chao Hu, the fifth largest freshwater lake in China
A cyanobacterial bloom in Chao Hu, the fifth largest freshwater lake in China

Other algal groups, such as some dinoflagellates, are commonly found in marine blooms. The colours of algal blooms in marine systems are more diverse depending on the type and density of bloom species. However, one kind of bloom, Noctiluca scintillans, is especially unattractive. Proliferation of this species creates a bloody red colour remarkably similar to the one described in Exodus, which may be one of the earliest recorded instances of a red tide (“… and all the waters that were in the river turned to blood.  And the fish that were in the river died, and the water stank …”).

A Noctiluca scintillans bloom off the coast of eastern Australia
A Noctiluca scintillans bloom off the coast of eastern Australia

Author

Qiang Yang: qiang.00.yang[at]gmail.com

Photo credits

Brian Skerry, National Geographic

Wikimedia commons

finance.ifeng.com

coolage.in

 

What’s the Point?

Introduction_img_1

What do you study that? It’s a common question, and one that’s often hard to answer. Some subjects have obvious and immediate uses (medicinal drug development is an obvious one) but others have less clear goals. Much, if not most, of science proceeds through slow increments building on past knowledge, without any grander desire than to find out why something is the way it is. Even discoveries that have revolutionised our lives were seen as small curiosities when first discovered. When asked about the use of electricity following its discovery Michael Faraday is said (erroneously) to have claimed “…one day you can tax it”.

Ecology is one area where the immediate uses are often hard to pin down. Surveys of animals are lovely, but what really is the point? In these economically-straitened times such questions demand an answer, if only because without one those surveys will no longer be funded. A recent survey by Marine Scotland brilliantly highlights their importance, discovering new species and new habitat which has major implications for fishing in the area.

They report the presence of extensive deep sea coral reefs and at least two new species of chemosynthetic clam which is a strong indication of the presence of cold seeps. Cold seeps are areas in the deep ocean where chemicals seep from the crust into the water. They were first discovered in 1983 and use hydrogen sulphide, rather than sunlight, as the basis of their ecosystem. The seep found by Marine Scotland is the first in near-UK waters and only the third in the North-East Atlantic, so it is a significant (and fantastic!) discovery.

The report also found evidence of extensive habitat loss due to bottom trawling. Bottom trawling is arguably one of the most destructive forms of fishing, taking not just the target fish but also any habitat that dares to rise above the sea bed. Rocks, sponges and corals all get caught and what is left behind is a barren plateau that can take years to recover. Due to the presence of the rare habitats found by the survey, as well as the clear evidence of fishing activity in the area, the report strongly recommended closure of fishing grounds in the survey area.

No one knew what, if anything, they would find when they left shore. They could have found nothing of importance but instead they found a type of habitat that has not been found in the region before and at least two new species; information that has led to commercially-significant recommendations.

This is the result of just one of the thousands of surveys done each year. Some of those surveys may not be useful now, some may be (like this one), and some may have a use in the future than can’t be predicted. Surveys aren’t glamorous, but they are extremely useful, and they are a perfect example of why not having narrow goals isn’t always a bad thing.

Author

Sarah Hearne: hearnes[at]tcd.ie

Photo credit

www.noaa.gov

Back from the dead

525px-Alice_par_John_Tenniel_09What do you associate with the word “extinction”?

I think of death, dinosaurs, dodos, desolation and despair (well maybe the last ones are a bit overly dramatic but I was feeling the alliterative vibe). No matter what your initial reactions may be, I think the concepts of extinction being irreversible and ultimately a “bad thing” would feature in most of our reactions to the word. It turns out that neither of these initial associations is necessarily true.

Extinctions are not always bad. It is all too easy to overlook their important role in shaping the evolution of life, a topic explored in a fascinating exhibition now on at London’s Natural History Museum. Extinction is arguably just as important as speciation in the evolution of our ecosystems so to think of it in a completely negative light is misguided.

However, extinction’s negative connotations are still very much justified. When humans mess with “natural” extinction trends is where we encounter problems. It’s a sad but true cliché that where humans go extinctions swiftly follow. Humans were either the direct cause or a major contributing factor in a depressingly long list of extinctions; from dodos and Tasmanian tigers to passenger pigeons and giant moas. When the last individuals of these species were either killed or lived out their days in captive isolation they marked one more reduction to global biodiversity and another page in the annals of the history of human stupidity and greed. Yet their extinction pronouncements may not be as final as they seem…

On the back of a recent TED special event, de-extinction is receiving increasing levels of attention and interest. The key concept arises from the intriguing difference between individual and genetic extinction; if DNA is salvageable then the possibility of raising species from the dead remains open. It’s a very attractive idea; extract some DNA, conduct some genetic jiggery pokery (can’t you just see my genetic expertise) to create viable stem cells or embryos, find a living relative of your target species and hey presto; an elephant gives birth to a woolly mammoth. The difficulties are found within the jiggery pokery steps; how to get enough good quality DNA to create viable stem cells and whether you can make a “pure” embryo of your species or create some kind of hybrid between living and extinct species. Despite the difficulties, the project to revive passenger pigeons is already underway with other candidate species including woolly mammoths, sabre-toothed cats and the great auk waiting in the wings.

The idea of coming face to face with a giant elephant bird or having your very own pet dodo is exciting to say the least – think of the revenue of a zoo which offered rides on a woolly mammoth! Yet de-extinction is a veritable minefield of ethical, ecological and legal debate. One of the main concerns, which I share, is the worry that even remote chances of successful de-extinction could detract from conservation efforts to save very much alive but critically endangered species. If we lose living species we can’t just 3D-print carbon copies and plonk them back into their habitats. De-extinction should be seen as a difficult, expensive and ultimately very risky last-resort measure to regain lost biodiversity, not an alternative to protecting what we have now.

Conservation issues aside, if by any chance we did manage to successfully re-create an extinct animal what happens next? Would it just become an expensive sideshow attraction at some zoo or, perhaps, have a glittering movie-star career (creating employment for the sabre-toothed cat animal trainers of tomorrow)? There are arguments that, with mass-scale de-extinction and subsequent successful breeding, new populations of revived species could be re-wilded back into their natural environments and help to restore ecological functioning. It sounds great but, given our chequered history of ecosystem meddling through species introductions it’s difficult to see how we could accurately predict or control what would happen if we introduced genetically engineered species into habitats which, most likely, have undergone extensive ecological change in that species’ absence.

De-extinction research is undoubtedly fascinating from a purely technological and scientific point of view. Furthermore, the prospect of reclaiming species from the past is sure to excite the latent Jurassic Park Ranger career aspirations of all of us. However, the controversies surrounding the process are well-justified and it’s clear that we have a long way to go before booking our next woolly mammoth safari holiday.

Still, perhaps the phrase “dead as a dodo” does not have as final connotations as we once thought…

Author

Sive Finlay: sfinlay[at]tcd.ie

Photo credit

Wikimedia commons

Bringing our perceptions closer to reality

mmw_womenscience0716This blog post was originally written and published here on the SoapBox Science blog. The Soapbox Science event showcases UK women in science to inspire the next generation of scientists by making science fun and accessible. This year it will take place on Friday 5th July 12-3pm on the Southbank in London. If you’re in the area why not go and take a look?

First a little thought experiment: without over thinking it, list ten top scientists in your field…now, honestly, what percentage of your list are women? Continue reading “Bringing our perceptions closer to reality”